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I fixed it by going to File -> Preferences -> Project Structure selecting the /django-project-name in the tree and clicking sources to add it.
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I had an issue with PyCharm not finding the templates folder for an existing Django project. So I created a test project and saw that the template folder setting is only added when setting up the project (it should be in project-root/.idea/project-name.iml)
Copying the same setting and changing the folder to the correct one fixed the issue for me.
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Python requires an __init__.py file in each directory that is a module or part of the project, in pycharm you can add extra paths via preferences
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Source:stackexchange.com