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I am not pretty sure, but I think when you’re calling the –no-site-packages option basically you are inheriting the modules installed in the system, I did the same as you and I could not find the site-packages folder (where your modules should be included when installed) on neither of my folders.
My recommendation is to avoid no-site-packages option if you want a “clean slate” installation of PIP.
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I was having a similar issue. I ended up setting the following environment variables, and it’s been smooth ever since.
PIP_REQUIRE_VIRTUALENV=true
PIP_RESPECT_VIRTUALENV=true
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