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You can use order_by(‘-thread’), like this :
Comment.objects.filter(thread__in=t).values('thread').annotate(total=Count('thread__id')).order_by('-thread')
And if you want to order records by rating of thread model,You can use double underscore “__” on thread key for foreign key lookup,
like this :
# rating likes
Comment.objects.filter(thread__in=t).values('thread').annotate(total=Count('thread__id')).order_by('thread__rating_likes')
Use this in all your queries as per the requirements.
Source:stackexchange.com