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You should push your new data into chartData object as per the yAxisID. try the following code.
function addData(chart,label, data) {
chart.data.labels.push(label);
for(var i=0; i< data.length; i++){
for(var k=0; k< chartData.datasets.length; k++){
if(chartData.datasets[k].yAxisID == data[i].yAxisID){
chartData.datasets[k].data.push(data[i].value);
}
}
}
chart.update();
console.log(chart.data);
}
var yArr = [ {yAxisID:"F", value: 64},{yAxisID:"G", value: 1.01} ];
addData(myChart,'Sat', yArr);
Source:stackexchange.com