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Managed to figure out the answer. There were 86 items in both data sets & the second dataset started at an index of 43. It’s a pretty ugly solution, but it works. Add the below in the options section.
tooltips: {
filter: function (tooltipItem, data) {
var label = data.labels[tooltipItem.index];
if (tooltipItem.datasetIndex > 42) {
return false;
} else {
return true;
}
}
}
Source:stackexchange.com