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I finally figured it out. It was much easier then I thought and I have no idea why I didn’t figure this out sooner..
Simply create seperate arrays within the first $.each loop and set the values..
var trendDataset = [];
$.each(trends.keywords, function(index, keyword) {
// Create an Array for each data object
trendData = [];
trendLabels = [];
$.each(keyword.data, function(index, data) {
trendLabels[index] = data.month,
trendData[index] = data.popularity
});
// Push the array with data to another array
trendDataset[index].data = trendData;
});
Source:stackexchange.com